“School of Biological”
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| Paper IPM / Biological / 13240 |
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| Abstract: | |||||||||
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In this paper, a new algorithm for alignment of two RNA secondary structures
without pseudoknots is presented. The algorithm is based on ï¬nding the longest
common sub-structures between two RNA structures and special eï¬ort is devoted
for aligning the beginning and the end parts of the existing stems (base pairs) in the
secondary structures of two RNAs. The results of structure alignment of diï¬erent
types of RNA by this algorithm are obtained, and the result of this algorithm show
more consistency with the models in the evolution rather than the other existing
structure alignment algorithms.
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