IPM Positions

Senior Researcher, School of Biological Sciences (2006 - Present )

Past IPM Positions

Associate Researcher (non-resident), School of Mathematics (2005 - 2006) Associate Researcher (non-resident), School of Mathematics (2000 - 2001)

Non IPM Affiliations

Professor of Shahid Beheshti University

Related Papers

1.	S.F. Khezri, A. Ebrahimi and C. Eslahchi Target Controllability: a Feed-Forward Greedy Algorithm in Complex Networks, Meeting Kalman’s Rank Condition Bioinformatics (2024),   [abstract]

2.	P. Niloofar, R. Aghdam and C. Eslahchi GAEM: Genetic Algorithm based Expectation-Maximization for inferring Gene Regulatory Networks from incomplete data Computers in Biology and Medicine 183 (2024),   [abstract]

3.	A. Darabi, S. Sobhani, R. Aghdam and C. Eslahchi AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides BMC Bioinformatics (2024),   [abstract]

4.	N. Babaiha, R. Aghdam, S. Ghiam and C. Eslahchi NN-RNALoc: Neural network-based model for prediction of mRNA sub-cellular localization using distance-based sub-sequence profiles PLOS ONE (2023),   [abstract]

5.	R. Masumshah and C. Eslahchi DPSP: a multimodal deep learning framework for polypharmacy side effects prediction Bioinformatics Advances (2023),   [abstract]

6.	M. Maghsoudi, R. Aghdam and C. Eslahchi Removing the association of random gene sets and survival time in cancers with positive random bias using fixed-point gene set Scientific Reports (2023),   [abstract]

7.	S. Ghiam, C. Eslahchi, K. Shahpasand, M. Habibi-Rezaei and S. Gharaghani Identification of repurposed drugs targeting significant long non-coding RNAs in the cross-talk between diabetes mellitus and Alzheimers disease Scientific Reports (2022),   [abstract]

8.	A. Shahir Sadr, Z. Abdollahpour, A. Aliahmadi, Ch. Eslahchi, M. Nekouei, L. Kiaei, M. Kiaei and A. Ghassempour Detection of structural and conformational changes in ALS-causing mutant profilin-1 with hydrogen/deuterium exchange mass spectrometry and bioinformatics techniques Metabolic Brain Disease 37 (2022), 229-241  [abstract]

9.	Sh. Ghiam, Ch. Eslahchi, K. Shahpasand, M. Habibi-Rezaei and S. Gharaghani Exploring the role of non-coding RNAs as potential candidate biomarkers in the cross-talk between diabetes mellitus and Alzheimer’s disease Frontiers in Aging Neuroscience (2022),   [abstract]

10.	A. Emdadi and Ch. Eslahchi Clinical drug response prediction from preclinical cancer cell lines by logistic matrix factorization approach Journal of bioinformatics and computational biology 20 (2022),   [abstract]

11.	M. Taheri-Ledari, A. Zandieh, S. P. Shariatpanahi and Ch. Eslahchi Assignment of structural domains in proteins using diffusion kernels on graphs BMC Bioinformatics 23 (2022), 369   [abstract]

12.	Sh. Ghiam, Ch. Eslahchi, K. Shahpasand, M. Habibi-Rezaei and S. Gharaghani Identification of repurposed drugs targeting significant long non-coding RNAs in the cross-talk between diabetes mellitus and Alzheimer’s disease Scientific Reports 12 (2022), 18332  [abstract]

13.	A. Shahir Sadr, Z. Abdollahpour, A. Aliahmadi, C. Eslahchi, M. Nekouei, L. Kiaei, M. Kiaei and A. Ghassempour Detection of structural and conformational changes in ALS-causing mutant profilin-1 with hydrogen/deuterium exchange mass spectrometry and bioinformatics techniques Metabolic Brain Disease (2021),   [abstract]

14.	R. Masumshah, R. Aghdam and C. Eslahchi A neural network‑based method for polypharmacy side efects prediction BMC Bioinformatics 22 (2021),   [abstract]

15.	A. Shahir Sadr, C. Eslahchi, A. Ghassempour and M. Kiaei In silico studies reveal structural deviations of mutant profilin-1 and interaction with riluzole and edaravone in amyotrophic lateral sclerosis Scientific Reports 11 (2021), 1-14  [abstract]

16.	F. Ahmadi Moughari and C. Eslahchi A computational method for drug sensitivity prediction of cancer cell lines based on various molecular information Plos One 16 (2021),   [abstract]

17.	F. Yassayee and C. Eslahchi Predicting Anti-Cancer Drug Response by Finding Optimal Subset of Drugs Bioinformatics (Accepted) [abstract]

18.	N. Rohani and C. Eslahchi Classifying Breast Cancer Molecular Subtypes using Deep Clustering Approach Frontiers in Genetics (Preprint) [abstract]

19.	N. Rohani, F. Ahmadi Moughari and C. Eslahchi DisCoVering potential candidates of RNAi-based therapy for COVID-19 using computational methods PeerJ 10.7717/peerj.10505 (2021),   [abstract]

20.	S. H. Mahmoodi, R. Aghdam and C. Eslahchi An order independent algorithm for inferring gene regulatory network using quantile value for conditional independence tests Scientific Reports 11 (2021), 1-15  [abstract]

21.	A. Emdadi and C. Eslahchi Auto-HMM-LMF: feature selection based method for prediction of drug response via autoencoder and hidden Markov model BMC Bioinformatics (2021), 1-22  [abstract]

22.	A. Emdadi and Ch. Eslahchi DSPLMF: A Method for Cancer Drug Sensitivity Prediction Using a Novel Regularization Approach in Logistic Matrix Factorization Frontiers in Genetics 11 (2020), 75  [abstract]

23.	F. Ahmadi Moughari and Ch. Eslahchi ADRML: anticancer drug response prediction using manifold learning Scientific Reports 10 (2020), 1-18  [abstract]

24.	N. Rohani, C. Eslahchi and A. Katanforoush ISCMF: Integrated similarity-constrained matrix factorization for drug–drug interaction prediction Network Modeling Analysis in Health Informatics and Bioinformatics 9 (2020), 1-8 https://doi.org/10.1007/s13721-019-0215-3  [abstract]

25.	F. Yassaee Meybodi, A. Emdadi, A. Rezvan and C. Eslahchi CAMND: Comparative analysis of metabolic network decomposition based on previous and two new criteria, a web based application Biosystems 189 (2020), https://doi.org/10.1016/j.biosystems.2019.104081  [abstract]

26.	E. Saberi Ansari, Ch. Eslahchi, M. Rahimi, L. Geranpayeh, M. Ebrahimi, R. Aghdam and G. Kerdivel Significant Random Signatures Reveals New Biomarker for Breast Cancer BMC Medical Genomics 12 (2019), https://doi.org/10.1186/s12920-019-0609-1  [abstract]

27.	S. M. Razavi, F. Rami, S. H. Razavi and Ch. Eslahchi TOPDRIVER: the novel identifier of cancer driver genes in Gastric cancer and Melanoma Applied Network Science 4 (2019), https://doi.org/10.1007/s41109-019-0200-x  [abstract]

28.	N. Rohani and Ch. Eslahchi Drug-Drug Interaction Predicting by Neural Network Using Integrated Similarity Scientific Reports 9 (2019), 1 - 11 DOI https://doi.org/10.1038/s41598-019-50121-3  [abstract]

29.	Ch. Eslahchi, A. M. Ali Maddi, F. Ahmadi Moughari and M. M. Balouchi CDAP: An Online Package for Evaluation of Complex Detection Methods Scientific Reports 9 DOI https://doi.org/10.1038/s41598-019-49225-7 (2019), 1-13   [abstract]

30.	A. Emdadi, F. Ahmadi Moughari, F. Yassaee Meybodi and Ch. Eslahchi A novel algorithm for parameter estimation of Hidden Markov Model inspired by Ant Colony Optimization Heliyon 5 (2019), https://doi.org/10.1016/j.heliyon.2019.e01299  [abstract]

31.	E. Mirzaei Mehrabad, R. Hassan Zadeh and C. Eslahchi PMLPR: A novel method for predicting subcellular localization based on recommender systems Scientific Reports 1 (2018), 8  [abstract]

32.	N. Sammaknejad, H. Pouretemad, C. Eslahchi, A. Salahirad and A. Alinejad Gender Classification Based on Eye Movements: A Processing Effect during Passive Face Viewing Journal Advances in Cognitive Psychology 13 (2017), 232-240  [abstract]

33.	A. Maddi and C. Eslahchi Discovering overlapped protein complexes from weighted PPI networks by removing inter-module hubs Scientific Reports doi:10.1038/s41598-017-03268-w (2017), 7: 3247  [abstract]

34.	R. Khosrowabadi, M. Sadeghi, F. Bakouie, H. Mahdavi, C. Eslahchi and H. Pouretemad Screening of autism based on task-free fMRI using graph theoretical approach Psychiatry Research: Neuroimaging 10.1016/j.pscychresns.2017.02.004 (2017), 48-56  [abstract]

35.	R. Aghdam. , M. Alijanpour. , M. Azadi. , A. Ebrahimi. , C. Eslahchi. and A. Rezvan. Inferring Gene Regulatory Networks by PCA-CMI Using Hill Climbing Algorithm Based on MIT Score and SORDER Method Int. J. Biomath. DOI: 10.1142/S1793524516500406 (2016), 18  [abstract]

36.	R. Aghdam, M. Ganjali. , P. Niloofar. and C. Eslahchi. Inferring gene regulatory networks by an order independent algorithm using incomplete data sets J. Appl. Statist. DOI:10.1080/02664763.2015.1079307 (2016), 1-21  [abstract]

37.	R. Aghdam. , M. Ganjali. , X. Zhang. and C. Eslahchi. CN: A Consensus Algorithm for Inferring Gene Regulatory Networks Using SORDER Algorithm and Conditional Mutual Information Test Molecular BioSystems DOI: 10.1039/C4MB00413B (2015), 942-949  [abstract]

38.	H. Poormohammadi, C. Eslahchi and R. Tusserkani TripNet: A Method for Constructing Rooted Phylogenetic Networks from Rooted Triplets Plos One (2014), http://dx.doi.org/10.1371/journal.pone.0106531  [abstract]

39.	A. Rezvan. , S. A. Marashi. and C. Eslahchi. FCDECOMP: Decomposition of metabolic networks based on flux coupling relations Bioinformatics and Computational Biology 12 (2014), 21  [abstract]

40.	R. Aghdam. , M. Ganjali. and C. Eslahchi. A Hybrid Algorithm for Inferring Gene Regulatory Networks Iranian Statistical Conference( In: ) [abstract]

41.	H. Poormohammadi. , C. Eslahchi. and R. Tusserkani. TripNet: A Method for Constructing Rooted Phylogenetic Networks from Triplets Plos One 9 (2014), 1-12  [abstract]

42.	R. Aghdam. , M. Alijanpour. , M. Azadi. , A. Ebrahimi. and C. Eslahchi. Applying a Hybrid Method based on PC algorithm-based approach and MIT Score to Infer Gene Regulatory Networks Iranian Conference on Bioinformatics (Accepted) [abstract]

43.	R. Hassanzadeh. , C. Eslahchi. and W. Sung. Do Triplets Have Enough Information to Construct the Multi-Labeled Phylogenetic Tree? Plos One DOI: 10.1371/journal.pone.0103622 (2014),   [abstract]

44.	C. Eslahchi. , H.R. Maimani. , R. Torabi. and R. Tuserkani. Proper nearly perfect sets in graphs Ars Combinatoria (Accepted) [abstract]

45.	C. Eslahchi. , H.R. Maimani. , R. Torabi. and R. Tuserkani. Dynamical 2-domination in graphs Ars Combinatoria (Accepted) [abstract]

46.	R. Aghdam. , M. Ganjali. and C. Eslahchi. IPCA-CMI: An algorithm for Inferring Gene Regulatory Networks Based on a Combination of PCA-CMI and MIT Score Plos One 9 (2014), e92600  [abstract]

47.	E. S. Ansari. , H. Pezeshk. , M. Sadeghi. and C. Eslahchi. ProDomAs; Protein Domain Assignment Algorithm using Centre-Based Clustering and Independent Dominating Set Proteins: Structure, Function and Bioinformatics 82 (2014), 1937â??1946  [abstract]

48.	C. Eslahchi. and E. S. Ansari. A New Protein Domain Assignment Algorithm Communications in Mathematical and Computer Chemistry 71 (2014), 445-456  [abstract]

49.	V.Rezaei. , S. Naghizadeh. , H. Pezeshk. , M. Sadeghi. and C. Eslahchi. Comparison of the bidirectional Baum-Welch algorithm and the Baum-Welch algorithm on regular lattice Progress in Biological Sciences 2 (2013), 14-22  [abstract]

50.	C.Eslahchi. Discovering domain mediating protein interactions IRANIAN JOURNAL of BIOTECHNOLOGY 1 (2013), 22-31  [abstract]

51.	V.Rezaei. , H. Pezeshk. , M. Sadeghi. and C. Eslahchi. Assignment Of Protein Sequences To Protein Family Profiles Using Spatial Statistics. MATCH Communication in Methematical and in Computer Chemistry 69 (2013), 7-24  [abstract]

52.	G. Taheri. , M. Habibi. , L. Wong. and C. Eslahchi. Disruption of Protein Complexes Bioinformatics and Computational Biology 11 (2013),   [abstract]

53.	G. Taheri. , M. Ayati. , S. Arab. , L. Wong. and C. Eslahchi. Two Scenarios for Overcoming Drug Resistance by Co-Targeting Bioinformatics Research and Applications (2013), 198 - 202  [abstract]

54.	Z. Safikhani. , M. Sadeghi. , H. Pezeshk. and C. Eslahchi. SSP: An interval integer linear programming for de novo transcriptome assembly and isoform discovery of RNA-seq reads Genomics 102 (2013), 507-514  [abstract]

55.	R. Aghdam. , H. Pezeshk. , S.A. Malekpour. , S. Shemehsavar. , M. Sadeghi. and C. Eslahchi. A Clustering Approach for Estimating Parameters of a Profle Hidden Markov Model International Journal of Data Mining and Bioinformatics 8 (2012), 66-82  [abstract]

56.	C. Eslahchi. and F. Movahedi. Calculation Of Transition Probabilities In The Birth And Death Markov Process In The Epidemic Model Math. Comput. Model 55 (2012), 810-815  [abstract]

57.	R. Hassanzadeh. , C. Eslahchi. and W. K. Sung. Constructing Phylogenetic Supernetworks Based On Simulated Annealing Molecular Phylogenetics and Evolution 63 (2012), 738-744  [abstract]

58.	C. Eslahchi. , R. Hassanzadeh. , E. Mottaghi. , M. Habibi. , H. Pezeshk. and M. Sadeghi. Constructing Circular Phylogenetic Networks From Weighted Quartets Using Simulated Annealing Mathematical Biosciences 235 (2012), 123-127  [abstract]

59.	H. Poormohammadi. and C. Eslahchi. Constructing Rooted Phylogenetic Networks From Triplets Based On Height Function Emerging Technology and Advanced Engineering 2 (2012), 389-393  [abstract]

60.	A. Ebrahimi. , R. Aghdam. , N. Parisa. , M. ganjali. and C. Eslahchi. An Algorithm for Inference of Gene Networks UsingBayesian Network Emerging Trends in Computing and information Science 5 (2012), 774-782  [abstract]

61.	M. Habibi. , C. Eslahchi. , H. Pezeshk. and M. Sadeghi. An Information Theoretic Approach To Secondary Structure Assignment MATCH Communications in Mathematical and in Computer Chemistry 65 (2011), 5-20  [abstract]

62.	C. Eslahchi. , A. Katanforoush. , H. Pezeshk. and N. Afzaly. Haplotype Block Partitioning And TagSNP Selection Under The Perfect Phylogeny Model IRANIAN JOURNAL of BIOTECHNOLOGY 9 (2011),   [abstract]

63.	S.Arab. , C. Eslahchi. , M. Sadeghi. , H. Pezeshk. and A. Sheari. A Pairwise Residue Contact Area-Based Mean Force Potential For Discrimination Of Native Protein Structure BMC Bioinformatics 11 (2010), 16  [abstract]

64.	H. Pezeshk. , S. Naghizadeh. , S. A. Malekpour. , C. Eslahchi. and M. Sadeghi. A Modified Bidirectional Hidden Markov Model And Its Application In Protein Secondary Structure Prediction Proceeding of the Second International Conference on Advanced Computer Control 3 (2010), 535-538  [abstract]

65.	C. Eslahchi. , M. Habibi. , R. Hassanzadeh. and E. Mottaghi. MC-Net: A Method For The Construction Of Phylogenetic Networks Based On The Monte-Carlo Method BMC Evolutionary Biology 10 (2010), 254  [abstract]

66.	M. Habibi. , C. Eslahchi. , M. Sadeghi. and H. Pezeshk. The Interpretation Of Protein Structures Based On Graph Theory And Contact Map Open Access Bioinformatics 2 (2010), 127-137  [abstract]

67.	M. Habibi. , C. Eslahchi. and L. Wong. A Protein Complex Prediction Based On K-Connected Sub-Graphs In Protein Interaction Network BMC Systems Biology 4 (2010), 129  [abstract]

68.	M. Sadeghi. , H. Pezeshk. , C. Eslahchi. , S. Ahmadian. and S. Mah Abadi. Construction Of Random Perfect Phylogeny Matrix Advances and Applications in Bioinformatics and Chemistry 3 (2010), 89-96  [abstract]

69.	M. Ayati. , G. Taheri. , S. Arab. , L. Wong. and C. Eslahchi. Overcoming Drug Resistance By Co-Targeting Bioinformatics & Biomedicine (2010), 198-202  [abstract]

70.	C. Eslahchi. , H. Pezeshk. , M. Sadeghi. , P. Giabbanelli. , F. Movahedi. and V.A. Dabbaghian. A Probabilistic Model For The Spread Of HIV Infection Among Injection Drug Users World Journal of Modelling and Simulation 6 (2010), 267-273  [abstract]

71.	R. Aghdam. , H. Pezeshk. , S.A. Malekpour. , S. Shemehsavar. , M. Sadeghi. and C. Eslahchi. A Bidirectional Bayesian Monte Carlo Approach For Estimating Parameters Of A Profile Hidden Markov Model Applied Science Segment 1 (2010),   [abstract]

72.	Ch. Eslahchi (Joint with M. Sadeghi, H. Pezeshk, S. Ahmadian, and S. Mah Abadi) Construction of random perfect phylogeny matrix Advances and Applications in Bioinformatics and Chemistry 3 (2010), 89-96  [abstract]

73.	H. Mirzaei. , S. Ahmadian. , S. Mahabadi. , M. Sadeghi. , C. Eslahchi. and H. Pezeshk. An Algorithm for Construction of All Perfect Phylogeny Matrices MATCH Communication in Methematical and in Computer Chemistry 62 (2009), 251  [abstract]

74.	M. Mirzaie. , C. Eslahchi. , H. Pezeshk. and M. Sadeghi. A distance-dependent atomic knowledge based potential and force for discrimination of native structures from decoys Proteins: Structure, Function and Bioinformatics 77 (2009), 454-463  [abstract]

75.	S. A. Malekpour. , S. Naghizadeh . , H. Pezeshk. , M. Sadeghi. and C. Eslahchi. Protein secondary structure prediction using three neural networks and a segmental semi Markov model Mathematical Biosciences 217 (2009), 145-150  [abstract]

76.	C. Eslahchi. , H. Pezeshk. , M. Sadeghi. , A. M. Rahimi. , H. Maboudi Afkham. and S. Arab. STON: Anovel method for protein three-dimensional structure comparison Computers in Biology and Medicine 39 (2009), 166-172  [abstract]

77.	M. Kargar. , H. Poormohammadi. , L. Pirhaji. , M. Sadeghi. , H. Pezeshk. and C. Eslahchi. Enhanced Evolutionary And Heuristic Algorithms For Haplotype Reconstruction Problem Using Minimum Error Correction Model Match 62 (2009), 261-274  [abstract]

78.	C. Eslahchi. , H. Pezeshk. , M. Sadeghi. and A. S. Attar. LIBRA: A de Novo Motif Finding In Promoter Sequences Based On Linear Algebra. Proceedings of world Academy of Science Engineering and Technology 37 (2009), 507-512  [abstract]

79.	M. Mirzaie. , C. Eslahchi. , H. Pezeshk. and M. Sadeghi. A Distance Dependent Atomic Knowledge Based Potential And Force For Discrimination Of Native Structures From Decoys Protein Journal 77 (2009), 454-463  [abstract]

80.	S. A. Malekpour. , S. Naghizadeh. , H. Pezeshk. , M. Sadeghi. and C. Eslahchi. A Segmental Semi Markov Model For Protein Secondary Structure Prediction Mathematical Biosciences 221 (2009), 130-135  [abstract]

81.	L. Pirhaji. , M. Kargar. , A. Sheari. , H. Poormohamadi. , M. Sadeghi. , H. Pezeshk. and C. Eslahchi. The Performance Of Chi-Square Test And Complexity Measures For Signal Recognition In Biological Sequences Journal of Theoretical Biology 251 (2008), 380-387  [abstract]

82.	A. Sheari. , M. Kargar. , A. Katanforoush. , S. Arab. , M. Sadeghi. , H. Pezeshk. , C. Eslahchi. and S. A. Marashi. A Tale of two Symmetrical Tails: Structural and Functional Charateristics of Palindroms in Proteins BMC Bioinformatics 9 (2008), 274  [abstract]

83.	M. Habibi. , C. Eslahchi. , H. Pezeshk. and M. Sadeghi. An Information Theoritical Approch To Secondary Structure Assignment Iran. Int. J. Sci. 34 (2008), 41-48  [abstract]

84.	S. Naghizadeh. , H. Pezeshk. , M. Sadeghi. , M. Mohammadzadeh. and C. Eslahchi. A MODIFICATION ON A LEFT-TO-RIGHT AND RIGHT-TO-LEFT DEPENDENCY MODEL FOR SECONDARY STRUCTURE PREDICTION Iran. Int. J. Sci. 34 (2008), 61-66  [abstract]

85.	S. R. Hosseini. , M. Sadeghi. , H. Pezeshk. , C. Eslahchi. and M. Habibi. PROSIGN: A Method for Protein Secondary Structure Assignment Based on Three-Dimensional Coordinates of Cosecutive Ca atoms Computational Biology and Chemistry 32 (2008), 406-411  [abstract]

86.	C. Eslahchi. , M. Sadeghi. , H. Pezeshk. , M. Kargar. and H. Poormohammadi. Haplotyping Problem, A Clustering Approach AIP 936 (2007), 185-190  [abstract]

87.	C. Eslahchi. , M. Sadeghi. , H. Pezeshk. , M. Kargar. and H. Poormohamadi. American Institute of Physics Conference Proceedings AIP CONF PROC 936 (2007),   [abstract]

88.	S. Arab. , F. Didehvar. , C. Eslahchi. and M. Sadeghi. Helix Segment Assignment In Proteins Using Fuzzy Logic IRANIAN JOURNAL of BIOTECHNOLOGY 5 (2007), 93-99  [abstract]

89.	Ch. Eslahchi and A. M. Rahimi Some properties of ordered hypergraphs Mat. Vesnik 59 (2007), 9-13  [abstract]

90.	H. Hajiabolhassan, M. Ghebleh and Ch. Eslahchi Some concepts in list coloring J. Combin. Math. Combin. Comput. 41 (2002), 151-160  [abstract]

91.	A. J. W. Hilton, Ch. Eslahchi and J. K. Dugdale The Hall-Condition index of a graph and overfull conjecture J. Combin. Math. Combin. Comput. 35 (2000), 197-216  [abstract]

92.	A. J. W. Hilton, Ch. Eslahchi and P. D. Johnson Jr. Progress on the Hall-Number-Two Problem Australas. J. Combin. 21 (2000), 211-236  [abstract]

93.	Ch. Eslahchi and M.L. Mehrabadi Characterization of graphs with Hall index 2 Australas. J. Combin. 21 (2000), 13-21  [abstract]

94.	Ch. Eslahchi, H. Hajiabolhassan, M.L. Mehrabadi and R. Tusserkani A counterexample for Hilton-Johnson's conjecture on list-coloring of graphs Australas. J. Combin. 18 (1998), 127-131  [abstract]